Circus Ponies has released v2 of their Notebook.
Official Site along with listing of new features (with screenshots).
What’s new: Over 150 New Features and Innovations
NoteBook is a combination outliner and free-form idea organizer that lets you clip, organize, and share unstructured information from any source in any way they like. The program uses an easy-to-understand notebook interface to provide state-of-the-art media capture, multi-dimensional indexing, and inter-application clipping services.